3RRB

Crystal structure of tm0922, a fusion of a domain of unknown function and ADP/ATP-dependent NAD(P)H-hydrate dehydratase from Thermotoga maritima in complex with AMP

Structural Biology Knowledgebase: 3RRB SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.216
  • R-Value Work: 0.167

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3RRB

Classification: LYASE

Total Structure Weight: 55997.68

Macromolecule Entities
Molecule Chains Length Organism Details
Putative uncharacterized protein A 502 Thermotoga maritima EC#: 4.2.1.93 IUBMB
Gene Name(s): nnr TM_0922
peptide B 6 Escherichia coli

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
AMP
Query on AMP

A ADENOSINE MONOPHOSPHATE
C10 H14 N5 O7 P
UDMBCSSLTHHNCD-KQYNXXCUSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
K
Query on K

A POTASSIUM ION
K
NPYPAHLBTDXSSS-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.216
  • R-Value Work: 0.167
  • Space Group: I 4 2 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 122.10 α = 90.00
b = 122.10 β = 90.00
c = 155.61 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-04-29
  • Released Date: 2011-07-27
  • Deposition author(s): Shumilin, I.A., Cymborowski, M., Lesley, S.A., Minor, W.

Revision History

  • 2012-10-31
    Type: Citation | Details: Citation update