3R88

Anthranilate phosphoribosyltransferase (trpD) from Mycobacterium tuberculosis (complex with inhibitor ACS145)

Structural Biology Knowledgebase: 3R88 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.73 Å
  • R-Value Free: 0.214
  • R-Value Work: 0.175

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3R88

Classification: Transferase / Transferase Inhibitor

Total Structure Weight: 78602.64

Macromolecule Entities
Molecule Chains Length Organism Details
Anthranilate phosphoribosyltransferase A, B 377 Mycobacterium tuberculosis EC#: 2.4.2.18 IUBMB
Gene Name(s): trpD Rv2192c MTCY190.03c
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
PRP
Query on PRP

A, B ALPHA-PHOSPHORIBOSYLPYROPHOSPHORIC ACID
C5 H13 O14 P3
PQGCEDQWHSBAJP-TXICZTDVSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
14F
Query on 14F

B 2-amino-4,5-dimethoxybenzoic acid
C9 H11 N O4
HJVAVGOPTDJYOJ-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

A GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A, B MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
14F Ki: 15000 nM (100) BindingDB

N/A in BindingMoad
Ki: 15000 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.73 Å
  • R-Value Free: 0.214
  • R-Value Work: 0.175
  • Space Group: C 1 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 94.31 α = 90.00
b = 78.85 β = 110.27
c = 100.49 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-03-23
  • Released Date: 2012-09-26
  • Deposition author(s): Castell, A., Short, F.L., Lott, J.S.

Revision History

  • 2013-11-27
    Type: Citation | Details: Citation update
  • 2013-04-10
    Type: Citation | Details: Citation update
  • 2013-02-20
    Type: Citation | Details: Citation update