3Q5E

crystal structure of human Atlastin-1 (residues 1-447) bound to GDP, crystal form 2

Structural Biology Knowledgebase: 3Q5E SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.01 Å
  • R-Value Free: 0.273
  • R-Value Work: 0.197

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3Q5E

Classification: HYDROLASE

Total Structure Weight: 207144.83

Macromolecule Entities
Molecule Chains Length Organism Details
Atlastin-1 A, C, E, G 447 Homo sapiens EC#: 3.6.5 IUBMB
Fragment: G and middle domain, UNP residues 1-447
Gene Name(s): ATL1 Gene View GBP3 Gene View SPG3A

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GDP
Query on GDP

A, C, E, G GUANOSINE-5'-DIPHOSPHATE
C10 H15 N5 O11 P2
QGWNDRXFNXRZMB-UUOKFMHZSA-N
Ligand Explorer
 
JSmol
MG
Query on MG

A, C, E, G MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer
 
JSmol

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.01 Å
  • R-Value Free: 0.273
  • R-Value Work: 0.197
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 104.39 α = 90.00
b = 133.55 β = 90.00
c = 175.84 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2010-12-28
  • Released Date: 2011-01-19
  • Deposition author(s): Byrnes, L.J., Sondermann, H.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4