3PP0

Crystal Structure of the Kinase domain of Human HER2 (erbB2).

Structural Biology Knowledgebase: 3PP0 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.25 Å
  • R-Value Free: 0.260
  • R-Value Work: 0.185

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3PP0

Classification: TRANSFERASE / TRANSFERASE INHIBITOR

Total Structure Weight: 77446.41

Macromolecule Entities
Molecule Chains Length Organism Details
Receptor tyrosine-protein kinase erbB-2 A, B 338 Homo sapiens EC#: 2.7.10.1 IUBMB
Fragment: kinase domain, residues 706-1009
Mutation: M706A, Q711L, M712L
Gene Name(s): ERBB2 Gene View HER2 MLN19 NEU NGL

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
03Q
Query on 03Q

A, B 2-{2-[4-({5-chloro-6-[3-(trifluoromethyl)phenoxy]pyridin- 3-yl}amino)-5H-pyrrolo[3,2-d]pyrimidin-5- yl]ethoxy}ethanol
C22 H19 Cl F3 N5 O3
XPUIECRALWERTL-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
03Q IC50: 11 nM (95) BindingDB

IC50: 11 nM  BindingMOAD
IC50: 11 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.25 Å
  • R-Value Free: 0.260
  • R-Value Work: 0.185
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 48.71 α = 90.00
b = 78.95 β = 90.00
c = 152.68 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2010-11-23
  • Released Date: 2011-03-30
  • Deposition author(s): Skene, R.J., Aertgeerts, K., Sogabe, S.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4