Human PARP-1 zinc finger 1 (Zn1) bound to DNA
DOI:10.2210/pdb3od8/pdb   NDB ID: NA0655
Primary Citation
  •   Molecular Description Hide
    Classification: DNA Binding Protein/dna
    Structure Weight: 131582.40
    Molecule: Poly [ADP-ribose] polymerase 1
    Polymer: 1 Type: protein Length: 116
    Chains: A, B, C, D, E, F, G, H
    Fragment: PARP-1 zinc finger 1, Zn1, UNP residues 2-96
    Organism: Homo sapiens
    Gene Names: ADPRT PPOL Gene View for PARP1
    UniProtKB: Search PDB | P09874   Protein Feature View
    Molecule: 5'-D(*GP*CP*CP*GP*CP*TP*TP*GP*GP*G)-3'
    Polymer: 2 Type: dna Length: 10
    Chains: I, K, M, O
    Molecule: 5'-D(*CP*CP*CP*AP*AP*GP*CP*GP*GP*C)-3'
    Polymer: 3 Type: dna Length: 10
    Chains: J, L, N, P
  •   Structure Validation Hide

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  • MolProbity Ramachandran Plot

  •   Related Citations in PDB Entry (REMARK 1) Hide
  •   Source Hide
    Polymer: 1
    Scientific Name: Homo sapiens   Taxonomy   Common Name: Human Expression System: Escherichia coli  
    Polymer: 2
    Scientific Name: Synthetic construct   Taxonomy    
    Polymer: 3
    Scientific Name: Synthetic construct   Taxonomy    
  •   Related PDB Entries Hide
    Identifier Details
    3ODA   Human PARP-1 zinc finger 2 (Zn2) bound to DNA 
    3ODC   Human PARP-1 zinc finger 1 (Zn1) bound to DNA 
    3ODE   Human PARP-1 zinc finger 2 (Zn2) bound to DNA 
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    ZN Zn
  •   Modified Residues Hide
    Identifier Formula Parent Type
    MSE C5 H11 N O2 Se MET lPeptideLinking
  •   External Domain Annotations Hide
  •   Structural Biology Knowledgebase Data Hide
  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure:NA0655
Data in orange boxes are gathered from external resources (when available).
  Biological Assembly 1       
Biological assembly 1 assigned by authors
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  •   Deposition Summary Hide
    Authors:   Pascal, J.M.,  Langelier, M.-F.

    Deposition:   2010-08-11
    Release:   2011-01-12
    Last Modified (REVDAT):   2011-06-08
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  •   Experimental Details Hide
    Exp. Data:
      Structure Factors
    Resolution[Å]:   2.40
    R-Value: 0.194 (obs.)
    R-Free: 0.241
    Space Group: P 1 21 1
    Unit Cell:
      Length [Å] Angles [°]
    a = 63.22 α = 90.00 
    b = 107.70 β = 100.20 
    c = 86.14 γ = 90.00