3OD8

Human PARP-1 zinc finger 1 (Zn1) bound to DNA

Structural Biology Knowledgebase: 3OD8 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.241
  • R-Value Work: 0.191

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3OD8

Classification: DNA BINDING PROTEIN / DNA

Total Structure Weight: 131582.40


Macromolecule Entities
Molecule Chains Length Organism Details
Poly [ADP-ribose] polymerase 1 A, B, C..., D, E, F, G, HA, B, C, D, E, F, G, H 116 Homo sapiens EC#: 2.4.2.30 IUBMB
Fragment: PARP-1 zinc finger 1, Zn1, UNP residues 2-96
Gene Name(s): PARP1 Gene View ADPRT PPOL
Macromolecule Entities
Molecule Chains Length Organism Details
5'-D(*GP*CP*CP*GP*CP*TP*TP*GP*GP*G)-3' I, K, M, O 10 synthetic
5'-D(*CP*CP*CP*AP*AP*GP*CP*GP*GP*C)-3' J, L, N, P 10 synthetic

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ZN
Query on ZN

A, B, C, D, E, F, G, H ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer
 
JSmol
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A, B, C, D, E, F, G, H L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.241
  • R-Value Work: 0.191
  • Space Group: P 1 21 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 63.22 α = 90.00
b = 107.70 β = 100.20
c = 86.14 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2010-08-11
  • Released Date: 2011-01-12
  • Deposition author(s): Pascal, J.M., Langelier, M.-F.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4