3INB

Structure of the measles virus hemagglutinin bound to the CD46 receptor

Structural Biology Knowledgebase: 3INB SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.1 Å
  • R-Value Free: 0.259
  • R-Value Work: 0.227

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3INB

Classification: VIRAL PROTEIN / IMMUNE SYSTEM

Total Structure Weight: 133771.44

Macromolecule Entities
Molecule Chains Length Organism Details
Hemagglutinin glycoprotein A, B 466 Measles virus Fragment: Head domain, residues 179-617
Mutation: T331A, A392T, N484T, S546G, E600V
Gene Name(s): H
Membrane cofactor protein C, D 126 Homo sapiens Fragment: Sushi domains 1 and 2, residues 35-160
Gene Name(s): CD46 Gene View MCP MIC10

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAG
Query on NAG

A, B, C, D N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A, B SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.1 Å
  • R-Value Free: 0.259
  • R-Value Work: 0.227
  • Space Group: P 2 2 21

Unit Cell:

Length (Å) Angle (°)
a = 81.36 α = 90.00
b = 105.83 β = 90.00
c = 208.71 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2009-08-12
  • Released Date: 2009-12-22
  • Deposition author(s): Santiago, C., Celma, M.L., Stehle, T., Casasnovas, J.M.

Revision History

  • 2011-07-13
    Type: Non-polymer description | Details: chemical name/synonym update
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4