3F3T

Kinase domain of cSrc in complex with inhibitor RL38 (Type III)

Structural Biology Knowledgebase: 3F3T SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.295
  • R-Value Work: 0.244

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3F3T

Classification: TRANSFERASE

Total Structure Weight: 66284.79

Macromolecule Entities
Molecule Chains Length Organism Details
Proto-oncogene tyrosine-protein kinase Src A, B 286 Gallus gallus EC#: 2.7.10.2 IUBMB
Fragment: Kinase Domain, UNP residues 251-533
Mutation: S345C
Gene Name(s): SRC Gene View

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
1AU
Query on 1AU

A 1-[1-(3-aminophenyl)-3-tert-butyl-1H-pyrazol- 5-yl]-3-naphthalen-1-ylurea
1-[2-(3-Amino-phenyl)-5-tert-butyl-2H-pyrazol- 3-yl]-3-naphthalen-1-yl-urea (Synonym)
C24 H25 N5 O
HJWMLCDGRWWLAQ-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
1AU IC50: 64100 nM (99) BindingDB

IC50: 64100 nM  BindingMOAD
Kd: 26000 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.295
  • R-Value Work: 0.244
  • Space Group: P 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 42.01 α = 78.71
b = 63.49 β = 89.71
c = 74.99 γ = 89.91

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2008-10-31
  • Released Date: 2009-03-03
  • Deposition author(s): Gruetter, C., Klueter, S., Getlik, M., Rauh, D.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4