3DYT

Crystal structure of Snx9PX-BAR (230-595), C2221

Structural Biology Knowledgebase: 3DYT SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.08 Å
  • R-Value Free: 0.245
  • R-Value Work: 0.217

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3DYT

Classification: TRANSPORT PROTEIN

Total Structure Weight: 43177.66

Macromolecule Entities
Molecule Chains Length Organism Details
Sorting nexin-9 A 366 Homo sapiens Fragment: UNP residues 230-595
Gene Name(s): SNX9 Gene View SH3PX1 SH3PXD3A

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SO4
Query on SO4

A SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.08 Å
  • R-Value Free: 0.245
  • R-Value Work: 0.217
  • Space Group: C 2 2 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 67.00 α = 90.00
b = 144.01 β = 90.00
c = 103.33 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2008-07-28
  • Released Date: 2008-09-16
  • Deposition author(s): Wang, Q., Kaan, H.Y.K., Sondermann, H.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4