3BRD

CSL (Lag-1) bound to DNA with Lin-12 RAM peptide, P212121

Structural Biology Knowledgebase: 3BRD SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.21 Å
  • R-Value Free: 0.257
  • R-Value Work: 0.208

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3BRD

Classification: DNA BINDING PROTEIN / DNA

Total Structure Weight: 67082.14


Macromolecule Entities
Molecule Chains Length Organism Details
Lin-12 and glp-1 phenotype protein 1, isoform a A 477 Caenorhabditis elegans Fragment: core domain
Gene Name(s): lag-1 CELE_K08B4.1 K08B4.1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Protein lin-12 D 29 Caenorhabditis elegans Fragment: RAM peptide
Gene Name(s): lin-12 R107.8
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
DNA (5'-D(*DTP*DTP*DAP*DCP*DTP*DGP*DTP*DGP*DGP*DGP*DAP*DAP*DAP*DGP*DA)-3') B 15 synthetic
DNA (5'-D(*DAP*DAP*DTP*DCP*DTP*DTP*DTP*DCP*DCP*DCP*DAP*DCP*DAP*DGP*DT)-3') C 15 synthetic

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
EDO
Query on EDO

A, C, D 1,2-ETHANEDIOL
ETHYLENE GLYCOL (Synonym)
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.21 Å
  • R-Value Free: 0.257
  • R-Value Work: 0.208
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 60.15 α = 90.00
b = 98.87 β = 90.00
c = 126.31 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2007-12-21
  • Released Date: 2008-04-01
  • Deposition author(s): Wilson, J.J., Kovall, R.A.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4