2YPF

Structure of the AvrBs3-DNA complex provides new insights into the initial thymine-recognition mechanism

Structural Biology Knowledgebase: 2YPF SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.55 Å
  • R-Value Free: 0.290
  • R-Value Work: 0.236

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2YPF

Classification: DNA BINDING PROTEIN / DNA

Total Structure Weight: 91840.10


Macromolecule Entities
Molecule Chains Length Organism Details
AVRBS3 A 758 Xanthomonas campestris Gene Name(s): hax2
Macromolecule Entities
Molecule Chains Length Organism Details
5'-D(*TP*TP*TP*AP*TP*AP*TP*AP*AP*AP*CP*CP*TP*AP *AP*CP*CP*CP*TP*CP*TP*AP)-3' B 22 Synthetic construct
5'-D(*TP*AP*GP*AP*GP*GP*GP*TP*TP*AP*GP*GP*TP*TP *TP*AP*TP*AP*TP*AP*AP)-3' C 21 Synthetic construct


Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.55 Å
  • R-Value Free: 0.290
  • R-Value Work: 0.236
  • Space Group: C 1 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 151.11 α = 90.00
b = 100.25 β = 102.55
c = 61.37 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-10-30
  • Released Date: 2013-08-28
  • Deposition author(s): Stella, S., Molina, R., Yefimenko, I., Prieto, J., Silva, G.H., Bertonati, C., Juillerat, A., Duchateau, P., Montoya, G.

Revision History

  • 2013-09-11
    Type: Source and taxonomy | Details: SOURCE
  • 2013-09-11
    Type: Citation | Details: JRNL
  • 2013-09-11
    Type: Entry title | Details: TITLE