2YNQ

Crystal Structure of Geobacillus thermodenitrificans EssB extracellular fragment

Structural Biology Knowledgebase: 2YNQ SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.221
  • R-Value Work: 0.186

Literature

Macromolecules
Sequence Display for 2YNQ

Classification: MEMBRANE PROTEIN

Total Structure Weight: 76591.23

Macromolecule Entities
Molecule Chains Length Organism Details
ESSB A, B, C, D 161 Geobacillus thermodenitrificans Fragment: EXTRACELLULAR DOMAIN, RESIDUES 241-397
Gene Name(s): GTNG_0418
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
MLI
Query on MLI

A, B, C MALONATE ION
C3 H2 O4
OFOBLEOULBTSOW-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

D GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

A, B, C CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NA
Query on NA

A, B, C, D SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.221
  • R-Value Work: 0.186
  • Space Group: C 1 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 132.89 α = 90.00
b = 110.62 β = 103.34
c = 97.41 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-10-17
  • Released Date: 2012-12-05
  • Deposition author(s): Zoltner, M., Fyfe, P.K., Hunter, W.N.

Revision History

  • 2013-11-13
    Type: Citation | Details: JRNL