2YNJ

GroEL at sub-nanometer resolution by Constrained Single Particle Tomography

Structural Biology Knowledgebase: 2YNJ SBKB.org


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 8.4 Å
  • Aggregation State: Particle
  • Specimen Type: Cryo Em
  • Reconstruction Method: Single Particle

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2YNJ

Classification: CHAPERONE

Total Structure Weight: 792200.22

Macromolecule Entities
Molecule Chains Length Organism Details
60 KDA CHAPERONIN A, B, C..., D, E, F, G, H, I, J, K, L, M, NA, B, C, D, E, F, G, H, I, J, K, L, M, N 524 Escherichia coli Gene Name(s): groL groEL UTI89_C4741

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
AGS
Query on AGS

A, B, C, D, E, F, G, H, I, J, K, L, M, N PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER
ATP-GAMMA-S; ADENOSINE 5'-(3-THIOTRIPHOSPHATE); ADENOSINE 5'- (GAMMA-THIOTRIPHOSPHATE); ADENOSINE-5'-DIPHOSPHATE MONOTHIOPHOSPHATE (Synonym)
C10 H16 N5 O12 P3 S
NLTUCYMLOPLUHL-KQYNXXCUSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
TL
Query on TL

A, B, C, D, E, F, G, H, I, J, K, L, M, N THALLIUM (I) ION
Tl
ZLUSCZLCHQSJRU-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A, B, C, D, E, F, G, H, I, J, K, L, M, N MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 8.4 Å
  • Aggregation State: Particle
  • Specimen Type: Cryo Em
  • Reconstruction Method: Single Particle

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-10-15
  • Released Date: 2012-12-12
  • Deposition author(s): Bartesaghi, A., Lecumberry, F., Sapiro, G., Subramaniam, S.

Revision History

  • 2012-12-19
    Type: Citation | Details: JRNL