2Y2V

Nonaged form of Mouse Acetylcholinesterase inhibited by sarin-Update

Structural Biology Knowledgebase: 2Y2V SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.45 Å
  • R-Value Free: 0.224
  • R-Value Work: 0.185

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2Y2V

Classification: HYDROLASE

Total Structure Weight: 122374.45

Macromolecule Entities
Molecule Chains Length Organism Details
ACETYLCHOLINESTERASE A, B 548 Mus musculus EC#: 3.1.1.7 IUBMB
Fragment: CATALYTIC DOMAIN, RESIDUES 32-574
Details: CATALYTIC SER203 PHOSPHONYLATED BY SARIN
Gene Name(s): Ache
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 5 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
P15
Query on P15

A 2,5,8,11,14,17-HEXAOXANONADECAN-19-OL
C13 H28 O7
FHHGCKHKTAJLOM-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NAG
Query on NAG

A, B N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ME2
Query on ME2

A, B 1-ETHOXY-2-(2-METHOXYETHOXY)ETHANE
C7 H16 O3
CNJRPYFBORAQAU-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
PEG
Query on PEG

A DI(HYDROXYETHYL)ETHER
C4 H10 O3
MTHSVFCYNBDYFN-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ETX
Query on ETX

B 2-ETHOXYETHANOL
C4 H10 O2
ZNQVEEAIQZEUHB-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
SGB
Query on SGB
A, B L-PEPTIDE LINKING C7 H16 N O5 P SER

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.45 Å
  • R-Value Free: 0.224
  • R-Value Work: 0.185
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 79.49 α = 90.00
b = 111.64 β = 90.00
c = 227.03 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2010-12-16
  • Released Date: 2011-11-30
  • Deposition author(s): Akfur, C., Artursson, E., Ekstrom, F.
  • Previous versions: 2JGG

Revision History

  • 2013-05-01
    Type: Other | Details: MTRIX2, MTRIX3, MTRIX1