2Y0I

FACTOR INHIBITING HIF-1 ALPHA IN COMPLEX WITH TANKYRASE-2 (TNKS2) FRAGMENT PEPTIDE (21-MER)

Structural Biology Knowledgebase: 2Y0I SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.28 Å
  • R-Value Free: 0.248
  • R-Value Work: 0.230

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2Y0I

Classification: OXIDOREDUCTASE / PEPTIDE

Total Structure Weight: 43611.96

Macromolecule Entities
Molecule Chains Length Organism Details
HYPOXIA-INDUCIBLE FACTOR 1-ALPHA INHIBITOR A 352 Homo sapiens EC#: 1.14.11.30 IUBMB 1.14.11.n4 IUBMB
Gene Name(s): HIF1AN Gene View FIH1
TANKYRASE-2 S 21 Homo sapiens EC#: 2.4.2.30 IUBMB
Fragment: TNKS2 FRAGMENT PEPTIDE, RESIDUES 538-558
Gene Name(s): TNKS2 Gene View PARP5B TANK2 TNKL

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
AKG
Query on AKG

A 2-OXOGLUTARIC ACID
C5 H6 O5
KPGXRSRHYNQIFN-UHFFFAOYSA-N
Ligand Explorer
 
JSmol
FE2
Query on FE2

A FE (II) ION
Fe
CWYNVVGOOAEACU-UHFFFAOYSA-N
Ligand Explorer
 
JSmol
GOL
Query on GOL

A GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer
 
JSmol
SO4
Query on SO4

A SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer
 
JSmol

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.28 Å
  • R-Value Free: 0.248
  • R-Value Work: 0.230
  • Space Group: P 41 21 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 86.49 α = 90.00
b = 86.49 β = 90.00
c = 146.71 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2010-12-02
  • Released Date: 2011-02-02
  • Deposition author(s): Chowdhury, R., Mcdonough, M.A., Schofield, C.J.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4