2WKO

STRUCTURE OF METAL LOADED PATHOGENIC SOD1 MUTANT G93A.

Structural Biology Knowledgebase: 2WKO SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.97 Å
  • R-Value Free: 0.231
  • R-Value Work: 0.174

Literature

Macromolecules
Sequence Display for 2WKO

Classification: OXIDOREDUCTASE

Total Structure Weight: 32390.07

Macromolecule Entities
Molecule Chains Length Organism Details
SUPEROXIDE DISMUTASE [CU-ZN] A 154 Homo sapiens EC#: 1.15.1.1 IUBMB
Fragment: RESIDUES 2-154
Mutation: G93A
Gene Name(s): SOD1 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
SUPEROXIDE DISMUTASE [CU-ZN] F 154 Homo sapiens EC#: 1.15.1.1 IUBMB
Fragment: RESIDUES 2-154
Mutation: G93A
Gene Name(s): SOD1 Gene View

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
IOD
Query on IOD

A, F IODIDE ION
I
XMBWDFGMSWQBCA-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

A, F ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CU
Query on CU

A, F COPPER (II) ION
Cu
JPVYNHNXODAKFH-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 2 Unique
ID Chains Type Formula 2D Diagram Parent
ACE
Query on ACE
A, F NON-POLYMER C2 H4 O --
CSO
Query on CSO
F L-PEPTIDE LINKING C3 H7 N O3 S CYS

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.97 Å
  • R-Value Free: 0.231
  • R-Value Work: 0.174
  • Space Group: P 1 21 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 51.49 α = 90.00
b = 47.16 β = 90.38
c = 56.36 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2009-06-16
  • Released Date: 2009-11-24
  • Deposition author(s): Antonyuk, S.V., Galaleldeen, A., Strange, R., Whitson, L., Narayana, N., Taylor, A., Schuermann, J.P., Holloway, S.P., Hasnain, S.S., Hart, P.J.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4