2WCX

CRYSTAL STRUCTURE OF HEPATITIS C VIRUS NS5B POLYMERASE IN COMPLEX WITH THIENOPYRROLE-BASED FINGER-LOOP INHIBITORS

Structural Biology Knowledgebase: 2WCX SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.209
  • R-Value Work: 0.167

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2WCX

Classification: HYDROLASE

Total Structure Weight: 60222.61

Macromolecule Entities
Molecule Chains Length Organism Details
RNA-DIRECTED RNA POLYMERASE A 537 Hepatitis c virus EC#: 2.7.7.48 IUBMB
Fragment: NS5B, RESIDUES 2420-2955
Gene Name(s):

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
VGC
Query on VGC

A 6-CYCLOHEXYL-4-METHYL-5-PHENYL-4H-THIENO[3,2- B]PYRROLE-2-CARBOXYLIC ACID
C20 H21 N O2 S
BNIGSPMLDODEAJ-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MN
Query on MN

A MANGANESE (II) ION
Mn
WAEMQWOKJMHJLA-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
VGC N/A in BindingDB
IC50: 25 nM  BindingMOAD
IC50: 25 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.209
  • R-Value Work: 0.167
  • Space Group: P 21 21 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 68.41 α = 90.00
b = 94.71 β = 90.00
c = 95.54 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2009-03-17
  • Released Date: 2009-08-18
  • Deposition author(s): Di Marco, S.

Revision History

  • 2011-11-23
    Type: Function and keywords | Details: KEYWDS
  • 2011-11-23
    Type: Citation | Details: JRNL
  • 2011-11-23
    Type: Atom nomenclature | Details: ATOM
  • 2011-11-23
    Type: Biological assembly | Details: REMARK 300,REMARK 350
  • 2011-11-23
    Type: Version format compliance | Details: REMARK 4
  • 2011-11-23
    Type: Refinement description | Details: REMARK 3
  • 2011-11-23
    Type: Other | Details: REMARK 525
  • 2011-11-23
    Type: Non-polymer description | Details: FORMUL
  • 2011-11-23
    Type: Geometry validation | Details: REMARK 500