2VV0

hPPARgamma Ligand binding domain in complex with DHA

Structural Biology Knowledgebase: 2VV0 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.55 Å
  • R-Value Free: 0.261
  • R-Value Work: 0.218

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2VV0

Classification: RECEPTOR

Total Structure Weight: 63556.56

Macromolecule Entities
Molecule Chains Length Organism Details
PEROXISOME PROLIFERATOR-ACTIVATED RECEPTOR GAMMA A, B 276 Homo sapiens Fragment: LIGAND BINDING DOMAIN, RESIDUES 202-475
Details: DHA
Gene Name(s): PPARG Gene View NR1C3

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
HXA
Query on HXA

A, B DOCOSA-4,7,10,13,16,19-HEXAENOIC ACID
C22 H32 O2
MBMBGCFOFBJSGT-KUBAVDMBSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.55 Å
  • R-Value Free: 0.261
  • R-Value Work: 0.218
  • Space Group: C 1 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 93.09 α = 90.00
b = 61.28 β = 103.19
c = 118.55 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2008-06-02
  • Released Date: 2008-08-19
  • Deposition author(s): Itoh, T., Fairall, L., Schwabe, J.W.R.

Revision History

  • 2012-06-06
    Type: Refinement description | Details: REMARK 3
  • 2012-06-06
    Type: Source and taxonomy | Details: SOURCE
  • 2012-06-06
    Type: Other | Details: REMARK 280,REMARK 900
  • 2012-06-06
    Type: Version format compliance | Details: REMARK 4
  • 2012-06-06
    Type: Citation | Details: JRNL
  • 2012-06-06
    Type: Biological assembly | Details: REMARK 300,REMARK 350
  • 2012-06-06
    Type: Geometry validation | Details: REMARK 500