2NL8

The origin binding domain of the SV40 large T antigen bound non specifically to a 17 bp palindrome DNA (sites 1 and 3)

Structural Biology Knowledgebase: 2NL8 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.299
  • R-Value Work: 0.237

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2NL8

Classification: DNA binding protein / DNA

Total Structure Weight: 20842.39


Macromolecule Entities
Molecule Chains Length Organism Details
large T antigen A 133 Simian virus 40 Fragment: Origin binding domain (residues 131-259)
Mutation: C216S
Gene Name(s):
Macromolecule Entities
Molecule Chains Length Organism Details
18-nt PEN element of the SV40 DNA origin W 18 synthetic P2 pentamer replaced with ATCAT


Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.299
  • R-Value Work: 0.237
  • Space Group: P 43 21 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 43.87 α = 90.00
b = 43.87 β = 90.00
c = 238.31 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2006-10-19
  • Released Date: 2006-12-12
  • Deposition author(s): Martynowski, D., Bochkareva, E., Bochkarev, A.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4