2JLP

CRYSTAL STRUCTURE OF HUMAN EXTRACELLULAR COPPER-ZINC SUPEROXIDE DISMUTASE.

Structural Biology Knowledgebase: 2JLP SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.185
  • R-Value Work: 0.150

Literature

Macromolecules
Sequence Display for 2JLP

Classification: OXIDOREDUCTASE

Total Structure Weight: 97419.98

Macromolecule Entities
Molecule Chains Length Organism Details
EXTRACELLULAR SUPEROXIDE DISMUTASE (CU-ZN) A, B, C, D 222 Homo sapiens EC#: 1.15.1.1 IUBMB
Mutation: A40T
Gene Name(s): SOD3 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ZN
Query on ZN

A, B, C, D ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CU
Query on CU

A, B, C, D COPPER (II) ION
Cu
JPVYNHNXODAKFH-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SCN
Query on SCN

B, C THIOCYANATE ION
C N S
ZMZDMBWJUHKJPS-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.185
  • R-Value Work: 0.150
  • Space Group: P 1 21 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 56.74 α = 90.00
b = 93.59 β = 106.23
c = 75.60 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2008-09-14
  • Released Date: 2009-03-17
  • Deposition author(s): Antonyuk, S.V., Strange, R.W., Marklund, S.L., Hasnain, S.S.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: Compliance with PDBx exchange dictionary V4
  • 2011-07-13
    Type: Flag residual B-value | Details: Tagged residual B temperature factor