2JC0

CRYSTAL STRUCTURE OF HEPATITIS C VIRUS POLYMERASE IN COMPLEX WITH INHIBITOR SB655264

Structural Biology Knowledgebase: 2JC0 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.248
  • R-Value Work: 0.181

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2JC0

Classification: HYDROLASE

Total Structure Weight: 128544.30

Macromolecule Entities
Molecule Chains Length Organism Details
RNA-DEPENDENT RNA-POLYMERASE A, B 570 Hepatitis c virus Fragment: RESIDUES 1-570
Mutation: R120H, E131V, A185V, C213N, R254K, C316N, T329V, A338V, Q464E, R531K
Gene Name(s):

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
699
Query on 699

A, B (2S,4S,5R)-2-ISOBUTYL-5-(2-THIENYL)-1-[4- (TRIFLUOROMETHYL)BENZOYL]PYRROLIDINE-2,4- DICARBOXYLIC ACID
C22 H22 F3 N O5 S
ZNCZVHCYBGHCHA-XPIZARPCSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
699 IC50: 190 - 300 nM (88) BindingDB

IC50: 20000 nM  BindingMOAD
IC50: 20000 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.248
  • R-Value Work: 0.181
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 85.74 α = 90.00
b = 105.89 β = 90.00
c = 126.12 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2006-12-18
  • Released Date: 2007-02-13
  • Deposition author(s): Wonacott, A., Skarzynski, T., Singh, O.M.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4