2G5U

Human Transthyretin (TTR) Complexed with Hydroxylated polychlorinated Biphenyl-4,4'-dihydroxy-3,3',5,5'-tetrachlorobiphenyl

Structural Biology Knowledgebase: 2G5U SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.220
  • R-Value Work: 0.180

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2G5U

Classification: HORMONE / GROWTH FACTOR

Total Structure Weight: 28202.98

Macromolecule Entities
Molecule Chains Length Organism Details
Transthyretin A, B 127 Homo sapiens Gene Name(s): TTR Gene View PALB

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
PCQ
Query on PCQ

A, B 3,5,3',5'-TETRACHLORO-BIPHENYL-4,4'-DIOL
C12 H6 Cl4 O2
YCYDXOVJXVALHY-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
PCQ N/A in BindingDB
Kd: 3.2 nM  BindingMOAD
Kd: 3.2 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.220
  • R-Value Work: 0.180
  • Space Group: P 21 21 2

Unit Cell:

Length (Å) Angle (°)
a = 43.24 α = 90.00
b = 85.84 β = 90.00
c = 64.79 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2006-02-23
  • Released Date: 2006-03-07
  • Deposition author(s): Palaninathan, S.K., Smith, C., Safe, S.H., Kelly, J.W., Sacchettini, J.C.

Revision History

  • 2011-07-13
    Type: Biological assembly | Details: Added software calculated values
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4