2D4K

Monoclinic hen egg-white lysozyme crystallized at 313K

Structural Biology Knowledgebase: 2D4K SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.15 Å
  • R-Value Free: 0.164
  • R-Value Work: 0.132

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2D4K

Classification: HYDROLASE

Total Structure Weight: 28850.27

Macromolecule Entities
Molecule Chains Length Organism Details
Lysozyme C A, N 129 Gallus gallus EC#: 3.2.1.17 IUBMB
Gene Name(s): LYZ Gene View

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CL
Query on CL

A, N CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NA
Query on NA

A, N SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.15 Å
  • R-Value Free: 0.164
  • R-Value Work: 0.132
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 27.22 α = 90.00
b = 63.48 β = 92.93
c = 59.19 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2005-10-20
  • Released Date: 2006-07-11
  • Deposition author(s): Harata, K., Akiba, T.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4