2BKZ

STRUCTURE OF CDK2-CYCLIN A WITH PHA-404611

Structural Biology Knowledgebase: 2BKZ SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Free: 0.259
  • R-Value Work: 0.230

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2BKZ

Classification: TRANSFERASE

Total Structure Weight: 131967.63

Macromolecule Entities
Molecule Chains Length Organism Details
CELL DIVISION PROTEIN KINASE 2 A, C 309 Homo sapiens EC#: 2.7.11.22 IUBMB
Gene Name(s): CDK2 Gene View CDKN2
CYCLIN A2 B, D 265 Homo sapiens Fragment: RESIDUES 174-432 (C-TERMINAL PORTION)
Gene Name(s): CCNA2 Gene View CCN1 CCNA

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SBC
Query on SBC

A, C 1-[4-(AMINOSULFONYL)PHENYL]-1,6-DIHYDROPYRAZOLO[3,4- E]INDAZOLE-3-CARBOXAMIDE
1-(4-SULFAMOYL-PHENYL)-1,4,5,6-TETRAHYDRO- BENZO-DIPYRAZOLE-3-CARBOXYLIC ACID AMIDE (Synonym)
C15 H12 N6 O3 S
HGAKLLFPOGATII-UHFFFAOYSA-N
Ligand Explorer
 
JSmol
SO4
Query on SO4

A, D SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer
 
JSmol
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
SBC N/A in BindingDB
N/A in BindingMoad
IC50: 7 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Free: 0.259
  • R-Value Work: 0.230
  • Space Group: P 62 2 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 183.86 α = 90.00
b = 183.86 β = 90.00
c = 214.57 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2005-02-23
  • Released Date: 2006-03-08
  • Deposition author(s): Dalessio, R., Bargiottia, A., Metz, S., Brasca, M.G., Cameron, A., Ermoli, A., Marsiglio, A., Polucci, P., Roletto, F., Tibolla, M., Vazquez, M.L., Vulpetti, A., Pevarello, P.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4