2B5J

Crystal structure of HIV-1 reverse transcriptase (RT) in complex with JANSSEN-R165481

Structural Biology Knowledgebase: 2B5J SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.9 Å
  • R-Value Free: 0.304
  • R-Value Work: 0.248

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2B5J

Classification: TRANSFERASE

Total Structure Weight: 115245.16

Macromolecule Entities
Molecule Chains Length Organism Details
Reverse transcriptase P66 SUBUNIT A 560 Human immunodeficiency virus 1 EC#: 2.7.7.49 IUBMB
Fragment: RESIDUES 599-1158
Mutation: C280S
Gene Name(s): gag-pol
Reverse transcriptase P51 SUBUNIT B 430 Human immunodeficiency virus 1 EC#: 2.7.7.49 IUBMB
Fragment: RESIDUES 599-1028
Mutation: C280S
Gene Name(s): gag-pol

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
3AC
Query on 3AC

A (2E)-3-{3-[(5-ETHYL-3-IODO-6-METHYL-2-OXO- 1,2-DIHYDROPYRIDIN-4-YL)OXY]PHENYL}ACRYLONITRILE
C17 H15 I N2 O2
XMFUXIRAVPMVRS-FNORWQNLSA-N
Ligand Explorer
 
JSmol
MN
Query on MN

A MANGANESE (II) ION
Mn
WAEMQWOKJMHJLA-UHFFFAOYSA-N
Ligand Explorer
 
JSmol
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
3AC N/A in BindingDB
N/A in BindingMoad
IC50: 0.8 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.9 Å
  • R-Value Free: 0.304
  • R-Value Work: 0.248
  • Space Group: C 1 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 224.59 α = 90.00
b = 69.30 β = 106.47
c = 105.02 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2005-09-28
  • Released Date: 2005-12-06
  • Deposition author(s): Himmel, D.H., Das, K., Clark Jr., A.D., Hughes, S.H., Benjahad, A., Oumouch, S., Guillemont, J., Coupa, S., Poncelet, A., Csoka, I., Meyer, C., Andries, K., Mguyen, C.H., Grierson, D.S., Arnold, E.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4