2B52

Human cyclin dependent kinase 2 (CDK2) complexed with DPH-042562

Structural Biology Knowledgebase: 2B52 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.88 Å
  • R-Value Free: 0.275
  • R-Value Work: 0.219

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2B52

Classification: transferase

Total Structure Weight: 34414.33

Macromolecule Entities
Molecule Chains Length Organism Details
Cell division protein kinase 2 A 298 Homo sapiens EC#: 2.7.11.22 IUBMB
Gene Name(s): CDK2 Gene View CDKN2
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
D42
Query on D42

A 1-(3-(2,4-DIMETHYLTHIAZOL-5-YL)-4-OXO-2,4- DIHYDROINDENO[1,2-C]PYRAZOL-5-YL)-3-(4-METHYLPIPERAZIN- 1-YL)UREA
DPH-042562 (Synonym)
C21 H23 N7 O2 S
KRKQVGZXTNLQSV-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
D42 N/A in BindingDB
IC50: 8 nM  BindingMOAD
IC50: 8 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.88 Å
  • R-Value Free: 0.275
  • R-Value Work: 0.219
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 72.03 α = 90.00
b = 72.01 β = 90.00
c = 53.50 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2005-09-27
  • Released Date: 2005-10-11
  • Deposition author(s): Muckelbauer, J.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4