1WM0

PPARgamma in complex with a 2-BABA compound

Structural Biology Knowledgebase: 1WM0 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.9 Å
  • R-Value Free: 0.295
  • R-Value Work: 0.191

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1WM0

Classification: TRANSCRIPTION / SIGNALING PROTEIN

Total Structure Weight: 35382.91

Macromolecule Entities
Molecule Chains Length Organism Details
Peroxisome proliferator activated receptor gamma X 292 Homo sapiens Fragment: residues 186-477
Gene Name(s): PPARG Gene View NR1C3
14-mer from Nuclear receptor coactivator 2 Y 14 Mus musculus Gene Name(s): Ncoa2 Grip1 Src2 Tif2

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
PLB
Query on PLB

X 2-[(2,4-DICHLOROBENZOYL)AMINO]-5-(PYRIMIDIN- 2-YLOXY)BENZOIC ACID
5-(2-PYRIMIDINYLOXY)-2-BENZOYLAMINOBENZOIC ACID (Synonym)
C18 H11 Cl2 N3 O4
VNDRRWBKNSHALL-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.9 Å
  • R-Value Free: 0.295
  • R-Value Work: 0.191
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 49.17 α = 90.00
b = 66.32 β = 90.00
c = 122.67 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2004-07-01
  • Released Date: 2004-09-07
  • Deposition author(s): Ostberg, T., Svensson, S., Selen, G., Uppenberg, J., Thor, M., Sundbom, M., Sydow-Backman, M., Gustavsson, A.L., Jendeberg, L.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4