1UJK

VHS domain of human GGA1 complexed with C-terminal phosphopeptide from BACE

Structural Biology Knowledgebase: 1UJK SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.245
  • R-Value Work: 0.213

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1UJK

Classification: PROTEIN TRANSPORT / Hydrolase

Total Structure Weight: 37331.54

Macromolecule Entities
Molecule Chains Length Organism Details
ADP-ribosylation factor binding protein GGA1 A, B 147 Homo sapiens Fragment: VHS domain, N-terminal domain
Gene Name(s): GGA1 Gene View
C-terminal peptide from Beta-secretase C, D 12 Homo sapiens EC#: 3.4.23.46 IUBMB 4.3.1.23 IUBMB
Mutation: S9X
Gene Name(s): BACE1 Gene View BACE KIAA1149

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
IOD
Query on IOD

A, B IODIDE ION
I
XMBWDFGMSWQBCA-UHFFFAOYSA-M
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
SEP
Query on SEP
C, D L-PEPTIDE LINKING C3 H8 N O6 P SER

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.245
  • R-Value Work: 0.213
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 48.54 α = 90.00
b = 72.31 β = 90.00
c = 103.13 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2003-08-05
  • Released Date: 2004-05-11
  • Deposition author(s): Shiba, T., Kametaka, S., Kawasaki, M., Shibata, M., Waguri, S., Uchiyama, Y., Wakatsuki, S.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4