1U5C

Plasmodium falciparum lactate dehydrogenase complexed with 3,7-dihydroxynaphthalene-2-carboxylic acid and NAD+

Structural Biology Knowledgebase: 1U5C SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.65 Å
  • R-Value Free: 0.239
  • R-Value Work: 0.154

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1U5C

Classification: OXIDOREDUCTASE

Total Structure Weight: 35714.31

Macromolecule Entities
Molecule Chains Length Organism Details
L-lactate dehydrogenase A 321 Plasmodium falciparum EC#: 1.1.1.27 IUBMB
Gene Name(s):

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAD
Query on NAD

A NICOTINAMIDE-ADENINE-DINUCLEOTIDE
C21 H27 N7 O14 P2
BAWFJGJZGIEFAR-NNYOXOHSSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
BIK
Query on BIK

A 3,7-DIHYDROXY-2-NAPHTHOIC ACID
3,7-DIHYDROXYNAPHTHALENE-2-CARBOXYLIC ACID (Synonym)
C11 H8 O4
QMWOUSYSNFCKAZ-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.65 Å
  • R-Value Free: 0.239
  • R-Value Work: 0.154
  • Space Group: I 2 2 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 80.22 α = 90.00
b = 86.02 β = 90.00
c = 91.07 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2004-07-27
  • Released Date: 2005-06-21
  • Deposition author(s): Conners, R., Cameron, A., Read, J., Schambach, F., Sessions, R.B., Brady, R.L.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Biological assembly | Details: Added software calculated values