1PYE

Crystal structure of CDK2 with inhibitor

Structural Biology Knowledgebase: 1PYE SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.252
  • R-Value Work: 0.239

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1PYE

Classification: TRANSFERASE

Total Structure Weight: 34354.15

Macromolecule Entities
Molecule Chains Length Organism Details
Cell division protein kinase 2 A 298 Homo sapiens EC#: 2.7.11.22 IUBMB
Gene Name(s): CDK2 Gene View CDKN2

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
PM1
Query on PM1

A [2-AMINO-6-(2,6-DIFLUORO-BENZOYL)-IMIDAZO[1,2- A]PYRIDIN-3-YL]-PHENYL-METHANONE
C21 H13 F2 N3 O2
WUGJIPFLBOATGL-UHFFFAOYSA-N
Ligand Explorer
 
JSmol
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
PM1 N/A in BindingDB
IC50: 320 nM  BindingMOAD
Ki: 386 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.252
  • R-Value Work: 0.239
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 52.80 α = 90.00
b = 72.11 β = 90.00
c = 71.09 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2003-07-08
  • Released Date: 2004-07-13
  • Deposition author(s): Zhang, F., Hamdouchi, C.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4