1PY1

Complex of GGA1-VHS domain and beta-secretase C-terminal phosphopeptide

Structural Biology Knowledgebase: 1PY1 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Free: 0.288
  • R-Value Work: 0.236

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1PY1

Classification: PROTEIN TRANSPORT

Total Structure Weight: 75654.84

Macromolecule Entities
Molecule Chains Length Organism Details
ADP-ribosylation factor binding protein GGA1 A, B, C, D 158 Homo sapiens Fragment: VHS Domain (Residues 2-157)
Gene Name(s): GGA1 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Beta-secretase E, F, G, H 8 Homo sapiens EC#: 3.4.23.46 IUBMB 4.3.1.23 IUBMB
Fragment: C-TERMINUS (RESIDUES 494-501)
Mutation: S5X
Gene Name(s): BACE1 Gene View BACE KIAA1149
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
SEP
Query on SEP
E, F, G, H L-PEPTIDE LINKING C3 H8 N O6 P SER

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Free: 0.288
  • R-Value Work: 0.236
  • Space Group: P 21 21 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 70.14 α = 90.00
b = 95.42 β = 90.00
c = 107.97 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2003-07-07
  • Released Date: 2003-11-04
  • Deposition author(s): Zhu, G., Zhang, X.C.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4