1MZ9

Storage function of COMP:the crystal structure of the coiled-coil domain in complex with vitamin D3

Structural Biology Knowledgebase: 1MZ9 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.254
  • R-Value Work: 0.231

Literature

Macromolecules
Sequence Display for 1MZ9

Classification: PROTEIN BINDING

Total Structure Weight: 27011.82

Macromolecule Entities
Molecule Chains Length Organism Details
cartilage oligomeric matrix protein A, B, C, D, E 45 Mus musculus Fragment: RESIDUES 27-71
Gene Name(s): Comp
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
VDY
Query on VDY

A, D 3-{2-[1-(5-HYDROXY-1,5-DIMETHYL-HEXYL)-7A- METHYL-OCTAHYDRO-INDEN-4-YLIDENE]-ETHYLIDENE}- 4-METHYLENE-CYCLOHEXANOL
25-HYDROXYVITAMIN D3 (Synonym)
C27 H44 O2
JWUBBDSIWDLEOM-DTOXIADCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.254
  • R-Value Work: 0.231
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 38.29 α = 90.00
b = 49.29 β = 103.87
c = 55.26 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-10-07
  • Released Date: 2003-01-28
  • Deposition author(s): Stetefeld, J.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4