1LD4

Placement of the Structural Proteins in Sindbis Virus

Structural Biology Knowledgebase: 1LD4 SBKB.org


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 11.4 Å
  • Aggregation State: Particle
  • Specimen Type: Vitreous Ice (cryo Em)
  • Reconstruction Method: Single Particle

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1LD4

Classification: Virus [ VIPERdb ]

Total Structure Weight: 361060.75

Macromolecule Entities
Molecule Chains Length Organism Details
Coat protein C A, B, C, D 264 Sindbis virus EC#: 3.4.21 IUBMB
Gene Name(s):
GENERAL CONTROL PROTEIN GCN4 E, F, G..., H, I, J, K, LE, F, G, H, I, J, K, L 57 Saccharomyces cerevisiae Fragment: LEUCINE-ZIPPER (residues 225-281)
Gene Name(s): GCN4 AAS3 ARG9 YEL009C
Spike glycoprotein E1 M, N, O, P 439 Sindbis virus Gene Name(s):

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
UNX
Query on UNX

F, H, J, L, M, N, O, P UNKNOWN ATOM OR ION
X
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 11.4 Å
  • Aggregation State: Particle
  • Specimen Type: Vitreous Ice (cryo Em)
  • Reconstruction Method: Single Particle

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-04-08
  • Released Date: 2002-11-04
  • Deposition author(s): Zhang, W., Mukhopadhyay, S., Pletnev, S.V., Baker, T.S., Kuhn, R.J., Rossmann, M.G.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4