1K5B

Crystal Structure of Human Angiogenin Variant des(121-123)

Structural Biology Knowledgebase: 1K5B SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.275
  • R-Value Work: 0.206

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1K5B

Classification: HYDROLASE

Total Structure Weight: 13932.73

Macromolecule Entities
Molecule Chains Length Organism Details
Angiogenin A 120 Homo sapiens EC#: 3.1.27 IUBMB
Mutation: Q1X, ΔR145, ΔR146, ΔP147
Gene Name(s): ANG Gene View RNASE5

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CIT
Query on CIT

A CITRIC ACID
C6 H8 O7
KRKNYBCHXYNGOX-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
PCA
Query on PCA
A L-PEPTIDE LINKING C5 H7 N O3 GLU

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.275
  • R-Value Work: 0.206
  • Space Group: P 21 21 2

Unit Cell:

Length (Å) Angle (°)
a = 86.45 α = 90.00
b = 40.41 β = 90.00
c = 32.98 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2001-10-10
  • Released Date: 2002-03-20
  • Deposition author(s): Leonidas, D.D., Shapiro, R., Subbarao, G.V., Russo, A., Acharya, K.R.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4