1H0D

CRYSTAL STRUCTURE OF HUMAN ANGIOGENIN IN COMPLEX WITH FAB FRAGMENT OF ITS MONOCLONAL ANTIBODY MAB 26-2F

Structural Biology Knowledgebase: 1H0D SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.272
  • R-Value Work: 0.232

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1H0D

Classification: IMMUNE SYSTEM / HYDROLASE

Total Structure Weight: 62716.03

Macromolecule Entities
Molecule Chains Length Organism Details
ANTIBODY FAB FRAGMENT, LIGHT CHAIN A 216 Homo sapiens Details: HINGE REGION OBSERVED IN THE FAB FRAGMENT
ANTIBODY FAB FRAGMENT, HEAVY CHAIN B 223 Homo sapiens Details: HINGE REGION OBSERVED IN THE FAB FRAGMENT
ANGIOGENIN C 123 Homo sapiens EC#: 3.1.27 IUBMB
Gene Name(s): ANG Gene View RNASE5

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GOL
Query on GOL

A, B GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer
 
JSmol
SO4
Query on SO4

A, B, C SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer
 
JSmol
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
PCA
Query on PCA
C L-PEPTIDE LINKING C5 H7 N O3 GLU

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.272
  • R-Value Work: 0.232
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 120.58 α = 90.00
b = 72.53 β = 112.46
c = 86.99 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-06-19
  • Released Date: 2003-06-19
  • Deposition author(s): Chavali, G.B., Papageorgiou, A.C., Acharya, K.R.

Revision History

  • 2011-10-12
    Type: Refinement description | Details: REMARK 3
  • 2011-10-12
    Type: Non-polymer description | Details: HETSYN,FORMUL
  • 2011-10-12
    Type: Geometry validation | Details: REMARK 500
  • 2011-10-12
    Type: Polymer description | Details: REMARK 400
  • 2011-10-12
    Type: Other | Details: REMARK 375,REMARK 470,REMARK 525,REMARK 280,REMARK 610
  • 2011-10-12
    Type: Biological assembly | Details: REMARK 300,REMARK 350
  • 2011-10-12
    Type: Version format compliance | Details: REMARK 4