1FKA

STRUCTURE OF FUNCTIONALLY ACTIVATED SMALL RIBOSOMAL SUBUNIT AT 3.3 A RESOLUTION

Structural Biology Knowledgebase: 1FKA SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.3 Å
  • R-Value Free: 0.305
  • R-Value Work: 0.304

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1FKA

Classification: ribosome

Total Structure Weight: 725015.56


Macromolecule Entities
Molecule Chains Length Organism Details
30S RIBOSOMAL PROTEIN S2 B 111 Thermus thermophilus
30S RIBOSOMAL PROTEIN S3 C 176 Thermus thermophilus
30S RIBOSOMAL PROTEIN S4 D 209 Thermus thermophilus Gene Name(s): rpsD rps4 TTHA1665
30S RIBOSOMAL PROTEIN S5 E 162 Thermus thermophilus Gene Name(s): rpsE TTHA1675
30S RIBOSOMAL PROTEIN S6 F 101 Thermus thermophilus Gene Name(s): rpsF TTHA0245
30S RIBOSOMAL PROTEIN S7 G 151 Thermus thermophilus Gene Name(s): rpsG rps7 TTHA1696
30S RIBOSOMAL PROTEIN S8 H 138 Thermus thermophilus Mutation: E25D, K37R, E52D, I61V, H62Y, K81H, R88K, P115S
Gene Name(s): rpsH TTHA1678
30S RIBOSOMAL PROTEIN S9 I 89 Thermus thermophilus
30S RIBOSOMAL PROTEIN S10 J 71 Thermus thermophilus
30S RIBOSOMAL PROTEIN S11 K 70 Thermus thermophilus
30S RIBOSOMAL PROTEIN S12 L 103 Thermus thermophilus
30S RIBOSOMAL PROTEIN S13 M 77 Thermus thermophilus
30S RIBOSOMAL PROTEIN S14 N 26 Thermus thermophilus
30S RIBOSOMAL PROTEIN S15 O 89 Thermus thermophilus Mutation: A80E, L81I, I82V, I87L
Gene Name(s): rpsO TTHA1138
30S RIBOSOMAL PROTEIN S16 P 73 Thermus thermophilus
30S RIBOSOMAL PROTEIN S17 Q 84 Thermus thermophilus
30S RIBOSOMAL PROTEIN S18 R 88 Thermus thermophilus Gene Name(s): rpsR TTHA0243
30S RIBOSOMAL PROTEIN S19 S 93 Thermus thermophilus Gene Name(s): rpsS TTHA1688
30S RIBOSOMAL PROTEIN S20 T 95 Thermus thermophilus
Macromolecule Entities
Molecule Chains Length Organism Details
16S RIBOSOMAL RNA A 1518 Thermus thermophilus

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
WO2
Query on WO2

A, C, G, H, K, R OCTADECATUNGSTENYL DIPHOSPHATE
O62 P2 W18
WXCYUHHUPKCTBX-HWHNUBGVCD
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
UNK
Query on UNK
B, C, I, J, K, L, M, N, P, Q, T L-PEPTIDE LINKING C4 H9 N O2 --

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.3 Å
  • R-Value Free: 0.305
  • R-Value Work: 0.304
  • Space Group: P 41 21 2

Unit Cell:

Length (Å) Angle (°)
a = 406.30 α = 90.00
b = 406.30 β = 90.00
c = 173.10 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2000-08-09
  • Released Date: 2000-09-04
  • Deposition author(s): Schluenzen, F., Tocilj, A., Zarivach, R., Harms, J., Gluehmann, M., Janell, D., Bashan, A., Bartels, H., Agmon, I., Franceschi, F., Yonath, A.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4