Crystal structure of HIV-1 capsid protein (p24) in complex with Fab13B5
1E6J
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Viral Protein
    Structure Weight: 70028.10
    Molecule: IMMUNOGLOBULIN
    Polymer: 1 Type: protein Length: 219
    Chains: H
    Fragment: HEAVY CHAIN 1-219
    Details: OBTAINED BY PAPAIN CLEAVAGE (FAB)
    Organism: Mus musculus
    Gene Name: Igh
    UniProtKB: Search PDB | Q99LC4   Protein Feature View
    Molecule: IMMUNOGLOBULIN
    Polymer: 2 Type: protein Length: 210
    Chains: L
    Fragment: LIGHT CHAIN 1-210
    Details: OBTAINED BY PAPAIN CLEAVAGE (FAB)
    Organism: Mus musculus
    Molecule: CAPSID PROTEIN P24
    Polymer: 3 Type: protein Length: 210
    Chains: P
    Fragment: GAG POLYPROTEIN RESIDUES 143-352
    Details: HIS6 TAG AT N-TERM, PRO1 AND ILE2 DELETED, C-TERMINUS MODIFIED
    Organism: HIV-1 M:B_HXB2R
    Gene Name: gag
    UniProtKB: Search PDB | H9A150   Protein Feature View
     
  •   Structure Validation Hide

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  • MolProbity Ramachandran Plot
     

  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Mus musculus   Taxonomy   Common Name: House mouse  
    Polymer: 2
    Scientific Name: Mus musculus   Taxonomy   Common Name: House mouse  
    Polymer: 3
    Scientific Name: Hiv-1 m\:b_hxb2r   Taxonomy   Expression System: Escherichia coli  
     
  •   Related PDB Entries Hide
    Identifier Details
    1A80   HIV CAPSID C-TERMINAL DOMAIN 
    1AFV   HIV-1 CAPSID PROTEIN C-TERMINAL FRAGMENT PLUS GAG P2 DOMAIN 
    1E6O   CRYSTAL STRUCTURE OF FAB13B5 AGAINST HIV-1 CAPSID PROTEIN P24 
    1ESK   SOLUTION STRUCTURE OF NCP7 FROM HIV-1 
    1TAM   HUMAN IMMUNODEFICIENCY VIRUS, NMR, MINIMIZED AVERAGE STRUCTURE 
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
 
Data in orange boxes are gathered from external resources (when available).
  Biological Assembly       
Biological assembly 1 generated by PQS (software)
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  •   Deposition Summary Hide
    Authors:   Berthet-Colominas, C.,  Monaco, S.,  Novelli, A.,  Sibai, G.,  Mallet, F.,  Cusack, S.

    Deposition:   2000-08-18
    Release:   2000-11-27
    Last Modified (REVDAT):   2014-03-12
     
  •   Revision History    Hide
    Mouse over text for details
    2014-03-12
    Function and keywords
    2014-03-12
    Citation
    2014-03-12
    Sequence database correspondence
    2014-03-12
    Biological assembly
    2014-03-12
    Polymer description
    2014-03-12
    Entry authorship
    2014-03-12
    Source and taxonomy
    2014-03-12
    Other
    2014-03-12
    Version format compliance
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    EDS  
    Resolution[Å]:   3.00
    R-Value: 0.210 (obs.)
    R-Free: 0.284
    Space Group: C 1 2 1
    Unit Cell:
      Length [Å] Angles [°]
    a = 193.08 α = 90.00 
    b = 45.60 β = 132.41 
    c = 132.47 γ = 90.00