1BV9

HIV-1 PROTEASE (I84V) COMPLEXED WITH XV638 OF DUPONT PHARMACEUTICALS

Structural Biology Knowledgebase: 1BV9 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Observed: 0.198

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1BV9

Classification: HYDROLASE

Total Structure Weight: 22310.51

Macromolecule Entities
Molecule Chains Length Organism Details
PROTEIN (HIV-1 PROTEASE) A, B 99 Human immunodeficiency virus 1 EC#: 3.4.23.16 IUBMB
Mutation: I84V
Gene Name(s): gag-pol

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
XV6
Query on XV6

A [4R-(4ALPHA,5ALPHA,6BETA,7BETA)]-3,3'-[[TETRAHYDRO- 5,6-DIHYDROXY-2-OXO-4,7-BIS(PHENYLMETHYL)- 1H-1,3-DIAZEPINE-1,3(2H)-DIYL] BIS(METHYLENE)]BIS[N- 2-THIAZOLYLBENZAMIDE]
XV638 (Synonym)
C41 H38 N6 O5 S2
JDALSSGOBMTZEP-NWJWHWDBSA-N
Ligand Explorer
 
JSmol
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
XV6 Ki: 0.027 nM (98) BindingDB

Ki: 1.1 nM  BindingMOAD
Ki: 0.11 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Observed: 0.198
  • Space Group: P 61

Unit Cell:

Length (Å) Angle (°)
a = 62.80 α = 90.00
b = 62.80 β = 90.00
c = 83.50 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1998-09-22
  • Released Date: 1998-09-30
  • Deposition author(s): Ala, P., Chang, C.H.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4