5LVK

Human Lysozyme soaked with [H2Ind][trans-RuCl4(DMSO)(HInd)]


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.49 Å
  • R-Value Free: 0.281
  • R-Value Work: 0.177

Literature

Macromolecules
Sequence Display for 5LVK

Classification: HYDROLASE

Total Structure Weight: 30239.96

Macromolecule Entities
Molecule Chains Length Organism Details
Lysozyme C A, B 130 Homo sapiens EC#: 3.2.1.17 IUBMB
Gene Name(s): LYZ Gene View LZM
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 5 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
RU
Query on RU

B RUTHENIUM ION
Ru
BPEVHDGLPIIAGH-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NO3
Query on NO3

B NITRATE ION
N O3
NHNBFGGVMKEFGY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

A, B CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NA
Query on NA

A, B SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.49 Å
  • R-Value Free: 0.281
  • R-Value Work: 0.177
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 42.04 α = 90.00
b = 64.10 β = 90.00
c = 111.31 γ = 90.00

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 2016-09-14
  • Released Date: 2016-09-28
  • Deposition author(s): Kurpiewska, K., Szura, A., Lewinski, K.

Revision History

  • Version 1_0: 2016-09-28

    Type: Initial release