5HOY

X-ray crystallographic structure of an A-beta 17_36 beta-hairpin. X-ray diffractometer data set. (LVFFAEDCGSNKCAII(SAR)LMV).


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.275
  • R-Value Work: 0.245

Literature

Macromolecules
Sequence Display for 5HOY

Classification: DE NOVO PROTEIN

Total Structure Weight: 14156.20

Macromolecule Entities
Molecule Chains Length Organism Details
Amyloid beta A4 protein A, B, C..., D, E, FA, B, C, D, E, F 21 Homo sapiens Fragment: UNP residues 687-707
Mutation: V9C, G14C
Gene Name(s): APP Gene View A4 AD1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
JEF
Query on JEF

D O-(O-(2-AMINOPROPYL)-O'-(2-METHOXYETHYL)POLYPROPYLENE GLYCOL 500)
JEFFAMINE (Synonym)
C30 H63 N O10
ICCXIDTYQFYPNV-RUMGZKRTSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 2 Unique
ID Chains Type Formula 2D Diagram Parent
ORN
Query on ORN
A, B, C, D, E, F L-PEPTIDE LINKING C5 H12 N2 O2 ALA
SAR
Query on SAR
A, B, C, D, E, F PEPTIDE LINKING C3 H7 N O2 GLY

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.275
  • R-Value Work: 0.245
  • Space Group: P 61 2 2

Unit Cell:

Length (Å) Angle (°)
a = 97.65 α = 90.00
b = 97.65 β = 90.00
c = 97.78 γ = 120.00

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 2016-01-19
  • Released Date: 2016-03-23
  • Deposition author(s): Kreutzer, A.G., Spencer, R.K., Nowick, J.S.

Revision History

  • Version 1_0: 2016-03-23

    Type: Initial release

  • Version 1_1: 2016-04-20

    Type: Database references

  • Version 1_2: 2017-09-13

    Type: Author supporting evidence, Derived calculations