5HBC

Intermediate structure of iron-saturated C-lobe of bovine lactoferrin at 2.79 Angstrom resolution indicates the softening of iron coordination


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.79 Å
  • R-Value Free: 0.273
  • R-Value Work: 0.206

Literature

Macromolecules
Sequence Display for 5HBC

Classification: HYDROLASE

Total Structure Weight: 78597.78

Macromolecule Entities
Molecule Chains Length Organism Details
Lactotransferrin A, B 348 Bos taurus EC#: 3.4.21 IUBMB
Fragment: UNP residues 361-708
Mutation: N565K, K608E
Gene Name(s): LTF Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAG
Query on NAG

A, B N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
BMA
Query on BMA

A, B BETA-D-MANNOSE
C6 H12 O6
WQZGKKKJIJFFOK-RWOPYEJCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
BCT
Query on BCT

A, B BICARBONATE ION
C H O3
BVKZGUZCCUSVTD-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
FE
Query on FE

A, B FE (III) ION
Fe
VTLYFUHAOXGGBS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.79 Å
  • R-Value Free: 0.273
  • R-Value Work: 0.206
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 159.65 α = 90.00
b = 82.58 β = 128.08
c = 107.69 γ = 90.00

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 2015-12-31
  • Released Date: 2016-01-20
  • Deposition author(s): Singh, A., Rastogi, N., Singh, P.K., Tyagi, T.K., Kaur, P., Sharma, S., Singh, T.P.

Revision History

  • Version 1_0: 2016-01-20

    Type: Initial release

  • Version 1_1: 2016-07-20

    Type: Database references