5E8O

The structure of the TEIPP associated altered peptide ligand Trh4-p2ABU in complex with H-2D(b)


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.98 Å
  • R-Value Free: 0.254
  • R-Value Work: 0.218

Literature

Macromolecules
Sequence Display for 5E8O

Classification: IMMUNE SYSTEM

Total Structure Weight: 89660.87

Macromolecule Entities
Molecule Chains Length Organism Details
H-2 class I histocompatibility antigen, D-B alpha chain A, D 276 Mus musculus Gene Name(s): H2-D1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Ceramide synthase 5 C, F 9 Mus musculus EC#: 2.3.1.24 IUBMB
Fragment: UNP residues 379-387
Mutation: C2X
Beta-2-microglobulin B, E 99 Mus musculus Gene Name(s): B2m
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
ABA
Query on ABA
C, F L-PEPTIDE LINKING C4 H9 N O2 ALA

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.98 Å
  • R-Value Free: 0.254
  • R-Value Work: 0.218
  • Space Group: I 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 90.86 α = 90.00
b = 123.33 β = 104.67
c = 97.55 γ = 90.00

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 2015-10-14
  • Released Date: 2016-02-03
  • Deposition author(s): Hafstrand, I., Doorduijn, E., Duru, A.D., Buratto, J., Oliveira, C.C., Sandalova, T., van Hall, T., Achour, A.

Revision History

  • Version 1_0: 2016-02-03

    Type: Initial release

  • Version 1_1: 2016-02-10

    Type: Database references

  • Version 1_2: 2016-03-02

    Type: Database references