5DUX

Crystal structure of the human galectin-4 N-terminal carbohydrate recognition domain in complex with 2'-fucosyllactose


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.85 Å
  • R-Value Free: 0.205
  • R-Value Work: 0.166

Literature

Macromolecules
Sequence Display for 5DUX

Classification: SUGAR BINDING PROTEIN

Total Structure Weight: 71138.77

Macromolecule Entities
Molecule Chains Length Organism Details
Galectin-4 A, B, C, D 155 Homo sapiens Fragment: N-terminal carbohydrate recognition domain (UNP residues 1-155)
Gene Name(s): LGALS4 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
LAT
Query on LAT

B, D BETA-LACTOSE
C12 H22 O11
GUBGYTABKSRVRQ-DCSYEGIMSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
FUC
Query on FUC

B, D ALPHA-L-FUCOSE
C6 H12 O5
SHZGCJCMOBCMKK-SXUWKVJYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

A, C GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
FMT
Query on FMT

D FORMIC ACID
C H2 O2
BDAGIHXWWSANSR-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.85 Å
  • R-Value Free: 0.205
  • R-Value Work: 0.166
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 63.15 α = 90.00
b = 64.47 β = 90.79
c = 64.65 γ = 90.00

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 2015-09-21
  • Released Date: 2016-02-17
  • Deposition author(s): Bum-Erdene, K., Blanchard, H.

Revision History

  • Version 1_0: 2016-02-17

    Type: Initial release