5DG1

Sugar binding protein - human galectin-2


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.2 Å
  • R-Value Free: 0.321
  • R-Value Work: 0.297

Literature

Macromolecules
Sequence Display for 5DG1

Classification: SUGAR BINDING PROTEIN

Total Structure Weight: 90755.31

Macromolecule Entities
Molecule Chains Length Organism Details
Galectin-2 A, B, C..., D, H, IA, B, C, D, H, I 135 Homo sapiens Gene Name(s): LGALS2 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
BGC
Query on BGC

C, H, I BETA-D-GLUCOSE
C6 H12 O6
WQZGKKKJIJFFOK-VFUOTHLCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GAL
Query on GAL

C, H, I BETA-D-GALACTOSE
C6 H12 O6
WQZGKKKJIJFFOK-FPRJBGLDSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.2 Å
  • R-Value Free: 0.321
  • R-Value Work: 0.297
  • Space Group: P 2 21 21

Unit Cell:

Length (Å) Angle (°)
a = 38.50 α = 90.00
b = 106.78 β = 90.00
c = 182.11 γ = 90.00

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 2015-08-27
  • Released Date: 2016-09-14
  • Deposition author(s): Su, J.Y., Si, Y.L.

Revision History

  • Version 1_0: 2016-09-14

    Type: Initial release

  • Version 1_1: 2017-09-27

    Type: Data collection, Derived calculations