5CJO

Crystal Structure Analysis of Elbow-Engineered-Fab-Bound Human Insulin Degrading Enzyme (IDE) in Complex with Insulin


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.29 Å
  • R-Value Free: 0.245
  • R-Value Work: 0.196

Literature

Macromolecules
Sequence Display for 5CJO

Classification: HYDROLASE / HYDROLASE INHIBITOR

Total Structure Weight: 166314.66

Macromolecule Entities
Molecule Chains Length Organism Details
Insulin-degrading enzyme A 990 Homo sapiens EC#: 3.4.24.56 IUBMB
Mutation: C110L, E111Q, C171S, C178A, C257V, C414L, C573N, C590S, C789S, C812A, C819A, C904S, C966N, C974A
Gene Name(s): IDE Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
FAB Heavy chain with engineered elbow H 239 Mus musculus
FAB light chain L 216 Mus musculus
Insulin a 20 Homo sapiens Gene Name(s): INS Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
EPE
Query on EPE

A 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
HEPES (Synonym)
C8 H18 N2 O4 S
JKMHFZQWWAIEOD-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

A ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.29 Å
  • R-Value Free: 0.245
  • R-Value Work: 0.196
  • Space Group: P 2 21 21

Unit Cell:

Length (Å) Angle (°)
a = 75.69 α = 90.00
b = 109.22 β = 90.00
c = 263.40 γ = 90.00

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 2015-07-14
  • Released Date: 2016-07-20
  • Deposition author(s): liang, w.g., bailey, L., tang, w.j.

Revision History

  • Version 1_0: 2016-07-20

    Type: Initial release

  • Version 1_1: 2017-11-01

    Type: Author supporting evidence, Derived calculations

  • Version 1_2: 2018-01-10

    Type: Database references