5AL0

Transthyretin binding heterogeneity and anti-amyloidogenic activity of natural polyphenols and their metabolites: resveratrol-3-O-sulfate


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.39 Å
  • R-Value Free: 0.209
  • R-Value Work: 0.171

Literature

Macromolecules
Sequence Display for 5AL0

Classification: TRANSPORT PROTEIN

Total Structure Weight: 28441.59

Macromolecule Entities
Molecule Chains Length Organism Details
TRANSTHYRETIN A, B 127 Homo sapiens Fragment: UNP RESIDUES 21-147
Gene Name(s): TTR Gene View PALB
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
R3S
Query on R3S

A, B RESVERATROL-3-O-SULFATE
C14 H12 O6 S
DULQFFCIVGYOFH-OWOJBTEDSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A, B SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
DMS
Query on DMS

A DIMETHYL SULFOXIDE
C2 H6 O S
IAZDPXIOMUYVGZ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.39 Å
  • R-Value Free: 0.209
  • R-Value Work: 0.171
  • Space Group: P 21 21 2

Unit Cell:

Length (Å) Angle (°)
a = 42.81 α = 90.00
b = 85.57 β = 90.00
c = 64.12 γ = 90.00

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 2015-03-05
  • Released Date: 2015-10-21
  • Deposition author(s): Florio, P., Foll, C., Cianci, M., Del Rio, D., Zanotti, G., Berni, R.

Revision History

  • Version 1_0: 2015-10-21

    Type: Initial release

  • Version 1_1: 2015-10-28

    Type: Database references

  • Version 1_2: 2016-01-13

    Type: Database references

  • Version 2_0: 2019-05-15

    Type: Atomic model, Data collection, Derived calculations, Experimental preparation, Other