4YN0

Crystal structure of APP E2 domain in complex with DR6 CRD domain


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.245
  • R-Value Work: 0.226

Literature

Macromolecules
Sequence Display for 4YN0

Classification: Apoptosis / Cell Adhesion

Total Structure Weight: 48427.18

Macromolecule Entities
Molecule Chains Length Organism Details
Tumor necrosis factor receptor superfamily member 21 A 190 Mus musculus Fragment: UNP RESIDUES 42-220
Details: Cysteine rich domain of mouse DR6 protein
Gene Name(s): Tnfrsf21 Dr6
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Amyloid beta A4 protein B 233 Mus musculus Fragment: UNP RESIDUES 370-592
Gene Name(s): App
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAG
Query on NAG

A, B N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.245
  • R-Value Work: 0.226
  • Space Group: P 61

Unit Cell:

Length (Å) Angle (°)
a = 67.32 α = 90.00
b = 67.32 β = 90.00
c = 226.23 γ = 120.00

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 2015-03-08
  • Released Date: 2015-04-15
  • Deposition author(s): Xu, K., Nikolov, D.

Revision History

  • Version 1_0: 2015-04-15

    Type: Initial release

  • Version 1_1: 2015-04-29

    Type: Database references

  • Version 1_2: 2017-09-20

    Type: Author supporting evidence, Database references, Derived calculations, Refinement description, Source and taxonomy