4Y19

immune complex


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.196
  • R-Value Work: 0.160

Literature

Macromolecules
Sequence Display for 4Y19

Classification: IMMUNE SYSTEM

Total Structure Weight: 99735.67

Macromolecule Entities
Molecule Chains Length Organism Details
HLA class II histocompatibility antigen, DR alpha chain A 189 Homo sapiens Fragment: UNP residues 26-206
Gene Name(s): HLA-DRA Gene View HLA-DRA1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
HLA class II histocompatibility antigen, DRB1-4 beta chain B 200 Homo sapiens Fragment: UNP residues 30-219
Gene Name(s): HLA-DRB1 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Insulin C 16 Homo sapiens Fragment: UNP residues 75-90
Gene Name(s): INS Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
FS18_alpha D 210 Homo sapiens
FS18_beta E 243 Homo sapiens

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAG
Query on NAG

A N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
BMA
Query on BMA

A BETA-D-MANNOSE
C6 H12 O6
WQZGKKKJIJFFOK-RWOPYEJCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MAN
Query on MAN

A ALPHA-D-MANNOSE
C6 H12 O6
WQZGKKKJIJFFOK-PQMKYFCFSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MLI
Query on MLI

B, D MALONATE ION
C3 H2 O4
OFOBLEOULBTSOW-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.196
  • R-Value Work: 0.160
  • Space Group: I 2 2 2

Unit Cell:

Length (Å) Angle (°)
a = 115.76 α = 90.00
b = 152.74 β = 90.00
c = 153.09 γ = 90.00

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 2015-02-07
  • Released Date: 2015-09-23
  • Deposition author(s): Beringer, D.X., Petersen, J., Reid, H.H., Rossjohn, J.

Revision History

  • Version 1_0: 2015-09-23

    Type: Initial release

  • Version 1_1: 2015-10-21

    Type: Data collection, Database references

  • Version 1_2: 2015-11-04

    Type: Database references

  • Version 1_3: 2017-09-13

    Type: Author supporting evidence, Data collection, Derived calculations

  • Version 1_4: 2018-01-17

    Type: Author supporting evidence