4X1D

Ytterbium-bound human serum transferrin


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.231
  • R-Value Work: 0.198

Literature

Macromolecules
Sequence Display for 4X1D

Classification: METAL TRANSPORT

Total Structure Weight: 151303.31

Macromolecule Entities
Molecule Chains Length Organism Details
Serotransferrin A, B 679 Homo sapiens Mutation: I429V
Gene Name(s): TF Gene View PRO1400
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
YB
Query on YB

A, B YTTERBIUM (III) ION
Yb
AWSFICBXMUKWSK-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MLI
Query on MLI

A, B MALONATE ION
C3 H2 O4
OFOBLEOULBTSOW-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

A, B GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.231
  • R-Value Work: 0.198
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 156.50 α = 90.00
b = 136.86 β = 90.41
c = 107.84 γ = 90.00

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 2014-11-24
  • Released Date: 2015-04-08
  • Deposition author(s): Wang, M., Zhang, H., Sun, H.

Revision History

  • Version 1_0: 2015-04-08

    Type: Initial release

  • Version 1_1: 2015-04-22

    Type: Database references

  • Version 1_2: 2015-05-06

    Type: Database references