4N87

Crystal structure of V30M mutant human transthyretin complexed with glabridin


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.79 Å
  • R-Value Free: 0.253
  • R-Value Work: 0.203

Literature

Macromolecules
Sequence Display for 4N87

Classification: TRANSPORT PROTEIN

Total Structure Weight: 35333.90

Macromolecule Entities
Molecule Chains Length Organism Details
Transthyretin A, B 159 Homo sapiens Mutation: V30M
Gene Name(s): TTR Gene View PALB
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GBJ
Query on GBJ

A, B 4-[(3R)-8,8-dimethyl-3,4-dihydro-2H,8H-pyrano[2,3- f]chromen-3-yl]benzene-1,3-diol
glabridin (Synonym)
C20 H20 O4
LBQIJVLKGVZRIW-ZDUSSCGKSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.79 Å
  • R-Value Free: 0.253
  • R-Value Work: 0.203
  • Space Group: P 21 21 2

Unit Cell:

Length (Å) Angle (°)
a = 43.03 α = 90.00
b = 84.95 β = 90.00
c = 64.45 γ = 90.00

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 2013-10-17
  • Released Date: 2014-02-19
  • Deposition author(s): Yokoyama, T., Kosaka, Y., Mizuguchi, M.

Revision History

  • Version 1_0: 2014-02-19

    Type: Initial release

  • Version 1_1: 2014-04-23

    Type: Database references