4GXL

The crystal structure of Galectin-8 C-CRD in complex with NDP52


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.02 Å
  • R-Value Free: 0.216
  • R-Value Work: 0.177

Literature

Macromolecules
Sequence Display for 4GXL

Classification: PROTEIN BINDING

Total Structure Weight: 19225.69

Macromolecule Entities
Molecule Chains Length Organism Details
Galectin-8 A 153 Homo sapiens Fragment: UNP residues 186-317
Gene Name(s): LGALS8 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Peptide from Calcium-binding and coiled-coil domain-containing protein 2 B 14 Homo sapiens Fragment: UNP residues 368-381
Gene Name(s): CALCOCO2 Gene View NDP52
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GOL
Query on GOL

A GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.02 Å
  • R-Value Free: 0.216
  • R-Value Work: 0.177
  • Space Group: C 2 2 2

Unit Cell:

Length (Å) Angle (°)
a = 76.09 α = 90.00
b = 124.83 β = 90.00
c = 43.74 γ = 90.00

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 2012-09-04
  • Released Date: 2013-05-08
  • Deposition author(s): Li, S., Wandel, M.P., Li, F., Liu, Z., He, C., Wu, J., Shi, Y., Randow, F.

Revision History

  • Version 1_0: 2013-05-08

    Type: Initial release

  • Version 1_1: 2017-11-15

    Type: Advisory, Refinement description